Use cases
What you can run with Helix.AI
Common bioinformatics workflows, described in plain language and executed reproducibly.
Bulk RNA-seq differential expression
Describe the comparison in plain language; Helix.AI proposes a QC, alignment, quantification, and differential-expression plan, then — after approval — runs it and returns annotated tables and publication-ready plots with the exact script used.
Variant calling from sequencing data
From raw reads to called variants: Helix.AI plans alignment, preprocessing, and calling steps, routes the work to appropriately sized infrastructure, and returns a validated variant set plus a reproducibility bundle.
Single-cell RNA-seq analysis
Helix.AI proposes a single-cell workflow — filtering, normalization, clustering, and marker identification — and produces interactive-ready outputs and figures after you approve the plan.
Custom tabular and scientific analysis
For bespoke questions, Helix.AI generates and runs a sandboxed analysis script. If no built-in tool fits, it writes a new one on demand — and every iteration patches the script rather than starting over.